| We have developed a web server for comparing protein structures in 3D space.
A user can input structures by either PDB codes or by uploading PDB format files from the local machine.
|
| Our current web server has four main services. The first service is a Protein Structure Comparison Tool
, which allows you to compare two structures accurately in 3D space and receive the results of multiple web servers via e-mail. |
| The second service is a Fast Pairwise Protein Structure Comparison Tool
, which can align hundreds of pairs of structures in one second. |
| The third service is a Protein Similar Structures Search Tool
, which compares one query structure against all the structures in the protein data bank in a fast pairwise manner. |
| The fourth service is a sample of Scop Domain Prediction Tool
. It can automatically assign a newly discovered protein to a domain of Scop. The prediction algorithm consists of sequence similarity search and structure similarity search. |
| The Pairwise Alignment Algorithm Experimental Results |
| 224 Alignment Cases |
| 129 Queries List |
| Appendix--Efficient Protein Alignment Algorithm for Protein Search |
